Product: Phospho-Parkin (Ser65) Antibody
Catalog: AF3500
Description: Rabbit polyclonal antibody to Phospho-Parkin (Ser65)
Application: WB IF/ICC
Reactivity: Human, Mouse, Rat
Mol.Wt.: 52kD(Calculated).
Uniprot: O60260
RRID: AB_2846814

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Product Info

Source:
Rabbit
Application:
IF/ICC 1:100-1:500, WB 1:500-2000
*The optimal dilutions should be determined by the end user.
*Tips:

WB: For western blot detection of denatured protein samples. IHC: For immunohistochemical detection of paraffin sections (IHC-p) or frozen sections (IHC-f) of tissue samples. IF/ICC: For immunofluorescence detection of cell samples. ELISA(peptide): For ELISA detection of antigenic peptide.

Reactivity:
Human,Mouse,Rat
Clonality:
Polyclonal
Specificity:
Phospho-Parkin (Ser65) Antibody detects endogenous levels of Parkin only when phosphorylated at Ser65.
RRID:
AB_2846814
Cite Format: Affinity Biosciences Cat# AF3500, RRID:AB_2846814.
Conjugate:
Unconjugated.
Purification:
The antibody is from purified rabbit serum by affinity purification via sequential chromatography on phospho-peptide and non-phospho-peptide affinity columns.
Storage:
Rabbit IgG in phosphate buffered saline , pH 7.4, 150mM NaCl, 0.02% sodium azide and 50% glycerol. Store at -20 °C. Stable for 12 months from date of receipt.
Alias:

Fold/Unfold

AR JP; E3 ubiquitin ligase; E3 ubiquitin protein ligase parkin; E3 ubiquitin-protein ligase parkin; FRA6E; LPRS 2; LPRS2; PARK 2; Park2; Parkin 2; Parkinson disease (autosomal recessive juvenile) 2; Parkinson disease (autosomal recessive, juvenile) 2, parkin; Parkinson disease protein 2; Parkinson juvenile disease protein 2; Parkinson protein 2 E3 ubiquitin protein ligase; Parkinson protein 2, E3 ubiquitin protein ligase (parkin); PDJ; PRKN 2; PRKN; PRKN2; PRKN2_HUMAN; Ubiquitin E3 ligase PRKN;

Immunogens

Immunogen:

A synthesized peptide derived from human Parkin around the phosphorylation site of Ser65.

Uniprot:
Gene(ID):
Expression:
O60260 PRKN_HUMAN:

Highly expressed in the brain including the substantia nigra. Expressed in heart, testis and skeletal muscle. Expression is down-regulated or absent in tumor biopsies, and absent in the brain of PARK2 patients. Overexpression protects dopamine neurons from kainate-mediated apoptosis. Found in serum (at protein level).

Sequence:
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV

PTMs - O60260 As Substrate

Site PTM Type Enzyme
Ubiquitination
S9 Phosphorylation
S19 Phosphorylation
K27 Ubiquitination
K48 Ubiquitination
S65 Phosphorylation Q9BXM7 (PINK1)
K76 Ubiquitination
S101 Phosphorylation P48729 (CSNK1A1)
S108 Phosphorylation
S116 Phosphorylation
S131 Phosphorylation Q00535 (CDK5)
S136 Phosphorylation
Y143 Phosphorylation P00519 (ABL1)
S193 Phosphorylation
S198 Phosphorylation
T204 Phosphorylation
S296 Phosphorylation
Y372 Phosphorylation
S378 Phosphorylation P48729 (CSNK1A1) , P53350 (PLK1)
T388 Phosphorylation
Y391 Phosphorylation

Research Backgrounds

Function:

Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins, such as BCL2, SYT11, CCNE1, GPR37, RHOT1/MIRO1, MFN1, MFN2, STUB1, SNCAIP, SEPTIN5, TOMM20, USP30, ZNF746 and AIMP2. Mediates monoubiquitination as well as 'Lys-6', 'Lys-11', 'Lys-48'-linked and 'Lys-63'-linked polyubiquitination of substrates depending on the context. Participates in the removal and/or detoxification of abnormally folded or damaged protein by mediating 'Lys-63'-linked polyubiquitination of misfolded proteins such as PARK7: 'Lys-63'-linked polyubiquitinated misfolded proteins are then recognized by HDAC6, leading to their recruitment to aggresomes, followed by degradation. Mediates 'Lys-63'-linked polyubiquitination of a 22 kDa O-linked glycosylated isoform of SNCAIP, possibly playing a role in Lewy-body formation. Mediates monoubiquitination of BCL2, thereby acting as a positive regulator of autophagy. Promotes the autophagic degradation of dysfunctional depolarized mitochondria (mitophagy) by promoting the ubiquitination of mitochondrial proteins such as TOMM20, RHOT1/MIRO1 and USP30. Preferentially assembles 'Lys-6'-, 'Lys-11'- and 'Lys-63'-linked polyubiquitin chains following mitochondrial damage, leading to mitophagy. Mediates 'Lys-48'-linked polyubiquitination of ZNF746, followed by degradation of ZNF746 by the proteasome; possibly playing a role in the regulation of neuron death. Limits the production of reactive oxygen species (ROS). Regulates cyclin-E during neuronal apoptosis. In collaboration with CHPF isoform 2, may enhance cell viability and protect cells from oxidative stress. Independently of its ubiquitin ligase activity, protects from apoptosis by the transcriptional repression of p53/TP53. May protect neurons against alpha synuclein toxicity, proteasomal dysfunction, GPR37 accumulation, and kainate-induced excitotoxicity. May play a role in controlling neurotransmitter trafficking at the presynaptic terminal and in calcium-dependent exocytosis. May represent a tumor suppressor gene.

PTMs:

Auto-ubiquitinates in an E2-dependent manner leading to its own degradation. Also polyubiquitinated by RNF41 for proteasomal degradation.

S-nitrosylated. The inhibition of PRKN ubiquitin E3 ligase activity by S-nitrosylation could contribute to the degenerative process in PD by impairing the ubiquitination of PRKN substrates.

Phosphorylation at Ser-65 by PINK1 contributes to activate PRKN activity. It is however not sufficient and requires binding to phosphorylated ubiquitin as well.

Subcellular Location:

Cytoplasm>Cytosol. Nucleus. Endoplasmic reticulum. Mitochondrion.
Note: Mainly localizes in the cytosol. Co-localizes with SYT11 in neutrites. Co-localizes with SNCAIP in brainstem Lewy bodies. Mitochondrial localization gradually increases with cellular growth. Also relocates to dysfunctional mitochondria that have lost the mitochondrial membrane potential; recruitment to mitochondria is PINK1-dependent.

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionSubcellular location
Tissue Specificity:

Highly expressed in the brain including the substantia nigra. Expressed in heart, testis and skeletal muscle. Expression is down-regulated or absent in tumor biopsies, and absent in the brain of PARK2 patients. Overexpression protects dopamine neurons from kainate-mediated apoptosis. Found in serum (at protein level).

Subunit Structure:

Forms an E3 ubiquitin ligase complex with UBE2L3 or UBE2L6. Mediates 'Lys-63'-linked polyubiquitination by associating with UBE2V1. Part of a SCF-like complex, consisting of PRKN, CUL1 and FBXW7. Interacts with SNCAIP. Binds to the C2A and C2B domains of SYT11. Interacts and regulates the turnover of SEPTIN5. Part of a complex, including STUB1, HSP70 and GPR37. The amount of STUB1 in the complex increases during ER stress. STUB1 promotes the dissociation of HSP70 from PRKN and GPR37, thus facilitating PRKN-mediated GPR37 ubiquitination. HSP70 transiently associates with unfolded GPR37 and inhibits the E3 activity of PRKN, whereas, STUB1 enhances the E3 activity of PRKN through promotion of dissociation of HSP70 from PRKN-GPR37 complexes. Interacts with PSMD4 and PACRG. Interacts with LRRK2. Interacts with RANBP2. Interacts with SUMO1 but not SUMO2, which promotes nuclear localization and autoubiquitination. Interacts (via first RING-type domain) with AIMP2 (via N-terminus). Interacts with PSMA7 and RNF41. Interacts with PINK1. Interacts with CHPF, the interaction with isoform 2 may facilitate PRKN transport into the mitochondria. Interacts with MFN2 (phosphorylated), promotes PRKN localization in dysfunctional depolarized mitochondria. Interacts with FBXO7; this promotes translocation to dysfunctional depolarized mitochondria. Interacts with heat shock protein 70 family members, including HSPA1L, HSPA1A and HSPA8; interaction HSPA1L promotes translocation to damaged mitochondria. Interacts with BAG4 and, to a lesser extent, BAG5; interaction with BAG4 inhibits translocation to damaged mitochondria. Forms a complex with PINK1 and PARK7.

Family&Domains:

The ubiquitin-like domain binds the PSMD4 subunit of 26S proteasomes.

The RING-type 1 zinc finger domain is required to repress p53/TP53 transcription.

Members of the RBR family are atypical E3 ligases. They interact with the E2 conjugating enzyme UBE2L3 and function like HECT-type E3 enzymes: they bind E2s via the first RING domain, but require an obligate trans-thiolation step during the ubiquitin transfer, requiring a conserved cysteine residue in the second RING domain (PubMed:21532592).

Belongs to the RBR family. Parkin subfamily.

Research Fields

· Genetic Information Processing > Folding, sorting and degradation > Ubiquitin mediated proteolysis.   (View pathway)

· Genetic Information Processing > Folding, sorting and degradation > Protein processing in endoplasmic reticulum.   (View pathway)

· Human Diseases > Neurodegenerative diseases > Parkinson's disease.

References

1). Novel role for caspase 1 inhibitor VX765 in suppressing NLRP3 inflammasome assembly and atherosclerosis via promoting mitophagy and efferocytosis. Cell Death & Disease (PubMed: 35641492) [IF=9.0]

2). Nuanxinkang prevents the development of myocardial infarction-induced chronic heart failure by promoting PINK1/Parkin-mediated mitophagy. PHYTOMEDICINE (PubMed: 36279758) [IF=7.9]

3). Regulators of calcineurin 1 deficiency attenuates tubulointerstitial fibrosis through improving mitochondrial fitness. The FASEB Journal (PubMed: 32896034) [IF=4.8]

4). Berberine Promotes Cardiac Function by Upregulating PINK1/Parkin-Mediated Mitophagy in Heart Failure. Frontiers in Physiology (PubMed: 33101051) [IF=4.0]

Application: WB    Species: mouse    Sample:

FIGURE 5 | Possible mechanism(s) underlying in the mitophagic regulation of berberine in Sham- and TAC-operated mice treated with or without BBR.(A)Representative gel blots for each group by western blot (n = 3)

5). Loss and recovery of myocardial mitochondria in mice under different tail suspension time: Apoptosis and mitochondrial fission, fusion and autophagy. Experimental Physiology (PubMed: 37565298) [IF=2.7]

Application: WB    Species: Mouse    Sample:

FIGURE 4 Protein levels of myocardial mitochondrial fission, fusion and autophagy-related factors in mice. (a) Representative immunoblots of myocardial mitochondrial fission, fusion and autophagy-related factors. (b) Representative polyacrylamide gel of total protein. (c) Ratio of P-DRP1 to DRP1. (d) Relative protein level of MFF. (e) Relative protein level of OPA1L. (f) Relative protein level of MFN1. (g) Relative protein level of MFN2. (h) Ratio of p-parkin to parkin protein level. (i) Relative protein level of PINK1. (j) Ratio of LC3II to LC3I. (k) Relative protein level of P62. Boxes represent upper and lower quartiles; middle horizontal line represents median; open circle represents average; lines extending from upper and lower ends represent upper and lower edges, respectively; asterisks represent extreme outliers; and points represent individual sample values. n = 8. Different letters indicate significant differences among TS-treated groups (P < 0.05). Abbreviations: CON, control group; TS2, 2 week tail suspension group; TS4, 4 week tail suspension group.

6). Novel ultrastructural findings on cardiac mitochondria of huddling Brandt's voles in mild cold environment. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology (PubMed: 32673738) [IF=2.3]

Application: WB    Species: voles    Sample: cardiac muscle

Fig. 8.| Changes in protein expression levels of mitochondrial autophagy-related factors in cardiac muscle of voles.Representative immunoblots of PINK1, Parkin, and P-Parkin in cardiac muscle.

7). MitoQ inhibits hepatic stellate cell activation and liver fibrosis by enhancing PINK1/parkin-mediated mitophagy. Open Medicine (PubMed: 34825063) [IF=2.1]

Application: WB    Species: Human    Sample: LX-2 cells

Figure 2 Mitophagy decreases with the activation of HSCs, and MitoQ enhances mitophagy. (a) Western blot analysis shows the collagen 1, α-SMA, PINK1, parkin, P-parkin, and TOM20 expression in the primary HSCs. (a1) Columns represent the gray-scale value of collagen 1 expression. (a2) Columns represent the gray-scale value of the α-SMA expression. (a3) Columns represent the gray-scale value of PINK1 expression. (a4) Columns represent the gray-scale value of parkin expression. (a5) Columns represent the gray-scale value of P-parkin expression. (a6) Columns represent the gray-scale value of TOM20 expression. Data show the mean ± standard deviation. Experiments were repeated three times. *P < 0.05, and **P < 0.01.

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